PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678423049
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 230aa    MW: 25670.7 Da    PI: 7.1251
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678423049genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.32.8e-314095359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                 k rYkeClkNhA+ +Ggha+DGCgEf+++ ge+gt ++lkCaAC+CHRnFHR+e+e+
    678423049 40 KSRYKECLKNHAVGIGGHALDGCGEFIAA-GEDGTLESLKCAACNCHRNFHRKEHEH 95
                 789*************************9.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-284193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-204291IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.2E-294292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.334392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.72E-19158228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30159228IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-25167223IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEFEEDQEEE QVGEVELGLS THDVKSPTPV NSSPPPSSMK SRYKECLKNH AVGIGGHALD  60
GCGEFIAAGE DGTLESLKCA ACNCHRNFHR KEHEHDDFTF HHHQQLLLGA PHGHFGYRGP  120
GGFLHLPAPP HQQRVPLLAL PSSSGGGGGS KDDMEEYYSN PSSSGGKKRV RTKFSQDQKD  180
KMLSFSERLG WRIQKQDEDL VQQFCHEVGI KRNVLKVWMH NNKHTLGKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-231682251875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097503.11e-100PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2596e-70ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLS8DMV21e-103S8DMV2_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA02G04550.23e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-61homeobox protein 22